Got your PM, as well as a few updates. First I want to thank everyone for the insight and help.
As for the bike, the shop sent the head to a machine shop to check for any cracks or imperfections. It came back good, and that there was no apparent signs of damage within the head or valve train, except the head gasket. Unfortunately, this means it is not covered under the warranty, as it does not cover rings or gaskets. The total bill is going to be ~$1000

eek

of which the shop will pay for half, or roughly $500 out of pocket.
They seem to be painfully slow at getting it completed. I probably will not get the back back until sometime in September.