I recently did mine and they turned out great!
I wet sanded with 1000 grit and then 1500 grit. This cuts right through the stains much faster than trying to rub it off with a rag and polish.
Follow the wet sanding with mothers power ball and mothers aluminum/mag polish. For between the pipes, I cut a micro fibre cloth into strips, applied the polish to the header with my finger, and then pulled back and forth on the ends of the rag.
Some say to take the headers off for better access, but IMO I think it would be easier with them left on the bike so that they are fixed in place and not sliding all over your kitchen table!
Here's a few pics..These were kind of rushed, and I went back after and took out any remaining micro scratches.
Good luck!